Issues

• Adding --models-directory support

  epi2me-labs/wf-basecalling#89 · Filter by author qiyubio opened on Aug 5, 2026
  1

• Match output directory naming convention

  epi2me-labs/wf-basecalling#85 · Filter by author HudoGriz opened on Apr 3, 2026
  1

• There is no default memory specification for steps/jobs

  epi2me-labs/wf-basecalling#84 · Filter by author TBradley27 opened on Mar 31, 2026
  1

• Dorado v1.3.1 Docker Image Release date

  question
  epi2me-labs/wf-basecalling#83 · Filter by author jonathjd opened on Jan 20, 2026
  1

• include basecall model and output in Gb at the top of the report

  epi2me-labs/wf-basecalling#82 · Filter by author LisaHagenau opened on Jan 13, 2026
  1

• barcode_kit can't be selected even if duplex=false

  epi2me-labs/wf-basecalling#80 · Filter by author tgelafr-pfzr opened on Dec 4, 2025
  1

• wf_dorado:split_calls fails to demux CRAMs due to incompatible @SQ headers

  epi2me-labs/wf-basecalling#78 · Filter by author bnguyen-lilly opened on Nov 10, 2025
  6

• Dorado v.1.2.0

  epi2me-labs/wf-basecalling#77 · Filter by author tgelafr-pfzr opened on Oct 30, 2025

• Unable to change hidden basecaller_chunk_size parameter with user.config

  epi2me-labs/wf-basecalling#73 · Filter by author istvankleijn opened on Aug 7, 2025
  1

• Inconsistency detected by ld.so leading to align_and_qsFilter error exit

  epi2me-labs/wf-basecalling#72 · Filter by author istvankleijn opened on Jul 7, 2025

• [error] Unknown argument: --kit-name when combining --duplex with --barcode_kit SQK-NBD114-96

  question
  epi2me-labs/wf-basecalling#42 · Filter by author chris-krohn opened on Jun 29, 2024
  1

  

• ln: failed to create symbolic link 'OPTIONAL_FILE': File exists

  epi2me-labs/wf-basecalling#35 · Filter by author weishwu opened on Mar 27, 2024
  7

  

• duplex basecalling with modified bases

  enhancementquestion
  epi2me-labs/wf-basecalling#32 · Filter by author istvankleijn opened on Feb 15, 2024
  1