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    28 repositories

    • fastcat

      Public
      Ultra fast FASTQ and BAM processing, filtering, concatenation and sequencing QC/statistics.
      C
      •
      Other
      •4•59•0•0•Updated Sep 26, 2026Sep 26, 2026

    • wf-aav-qc

      Public
      Python
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      Other
      •11•8•2•0•Updated Sep 17, 2026Sep 17, 2026

    • wf-transcriptomes

      Public
      Python
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      Other
      •50•116•23•0•Updated Aug 5, 2026Aug 5, 2026

    • wf-template

      Public
      Nextflow workflow template repository
      Python
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      Other
      •36•20•0•0•Updated Jul 29, 2026Jul 29, 2026

    • wf-human-variation

      Public
      Nextflow
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      Other
      •86•179•26•1•Updated Jul 20, 2026Jul 20, 2026

    • wf-flu

      Public
      Python
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      Other
      •8•22•4•0•Updated Jun 1, 2026Jun 1, 2026

    • wf-basecalling

      Public
      Nextflow
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      Other
      •30•52•13•2•Updated Apr 10, 2026Apr 10, 2026

    • ezcharts

      Public
      Python
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      Other
      •0•23•0•0•Updated Mar 27, 2026Mar 27, 2026

    • wf-amplicon

      Public
      Python
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      Other
      •14•45•2•0•Updated Mar 13, 2026Mar 13, 2026

    • wf-alignment

      Public
      Python
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      Other
      •27•34•3•0•Updated Mar 9, 2026Mar 9, 2026

    • wf-bacterial-genomes

      Public
      Small variant calling for haploid samples
      Python
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      Other
      •21•60•12•0•Updated Mar 3, 2026Mar 3, 2026

    • wf-single-cell

      Public
      End-to-end analysis of Oxford Nanopore single-cell sequencing, from barcode and UMI identification to gene and transcript expression
      Python
      •
      Other
      •54•120•25•2•Updated Jan 23, 2026Jan 23, 2026

    • wf-16s

      Public
      Nextflow
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      Other
      •8•51•4•0•Updated Jan 23, 2026Jan 23, 2026

    • wf-metagenomics

      Public
      Metagenomic classification of long-read sequencing data
      Python
      •
      Other
      •37•111•5•1•Updated Jan 22, 2026Jan 22, 2026

    • wf-teloseq

      Public
      Python
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      Other
      •2•6•1•0•Updated Dec 16, 2025Dec 16, 2025

    • wf-clone-validation

      Public
      Python
      •
      Other
      •31•43•8•0•Updated Dec 15, 2025Dec 15, 2025

    • wf-trio

      Public
      Nextflow
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      Other
      •4•4•7•1•Updated Nov 24, 2025Nov 24, 2025

    • wf-somatic-variation

      Public
      Nextflow
      •
      Other
      •13•22•16•0•Updated Nov 24, 2025Nov 24, 2025

    • wf-pore-c

      Public
      Nextflow
      •
      Other
      •13•54•13•0•Updated Nov 24, 2025Nov 24, 2025

    • kraken2-server

      Public
      Kraken2 Server
      C++
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      Other
      •5•23•0•0•Updated Nov 24, 2025Nov 24, 2025

    • .github

      Public
      0•0•0•0•Updated Nov 24, 2025Nov 24, 2025

    • modbam2bed

      Public
      Aggregate modified-base calls from BAM files into bedMethyl for downstream methylation analysis
      C
      •
      Other
      •10•53•0•0•Updated Sep 27, 2025Sep 27, 2025

    • wf-mpx

      Public archive
      Nextflow
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      Other
      •7•8•1•0•Updated Apr 29, 2025Apr 29, 2025

    • wf-artic

      Public archive
      ARTIC SARS-CoV-2 workflow and reporting
      Nextflow
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      Other
      •36•51•11•0•Updated Apr 25, 2025Apr 25, 2025

    • wf-tb-amr

      Public archive
      Python
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      Other
      •2•5•1•0•Updated Apr 24, 2025Apr 24, 2025

    • wf-cas9

      Public archive
      Nextflow
      •
      Other
      •2•6•2•0•Updated Apr 24, 2025Apr 24, 2025

    • pore-c-py

      Public
      Python
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      Other
      •6•18•1•0•Updated Aug 14, 2024Aug 14, 2024

    • pychopper

      Public
      cDNA read preprocessing
      Python
      •
      Other
      •10•96•16•0•Updated Jul 25, 2024Jul 25, 2024
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